ProSeg - Search Options

Search Options

Clustering conditions
ProSeg contains the several sets of clusters that were produced by altering the methods or parameters in clustering analysis. By specifying the different conditions, you can search other sets of clusters.

Set of representative proteins (RPD):

Segment length (L) :

Clustering method (CM):

Threshold parameter (Dth): [deg]

Available parameter sets (Nov, 2007)
PRD Culled PDB (version: Dec. 13, 2001)

L 5 9 11 15

CM ONE_PASS ONE_PASS 3D_MESH ONE_PASS ONE_PASS

Dth 30 30 40 - 30 30
Output options
You can select output options to taste.

No. of clusters per page

Allow the pictures of clusters in list

Available parameter sets (Nov, 2007)
PRD	Culled PDB (version: Dec. 13, 2001)
L	5	9	11	15
CM	ONE_PASS	ONE_PASS	3D_MESH	ONE_PASS	ONE_PASS
Dth	30	30	40	-	30	30

Criteria for searching targets

In ProSeg, several structual properties of each cluster have been analyzed in advance. By inputting appropriate values below, you can reduce the targets when searching and get more focused outputs.

Distance from your query to cluster center [deg]:		≤ Dissim ≤
Rank of clusters:		≤ r ≤
Radius of gyration [A]:		≤ R_G ≤
Backbone RMS deviations [A]:		≤ RMSD ≤
No. of hydrogen bonds:		≤ HB ≤
KL entropy [bit]:		≤ KL ≤

Set of representative proteins (RPD):
Segment length (L) :
Clustering method (CM):
Threshold parameter (Dth):	[deg]

No. of clusters per page
Allow the pictures of clusters in list